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3 Introduction of BenchmarkInsights class6 months ago
Motivation | Creating BenchmarkInsights class | Visualization | Available plot | Interpretation benchmark result | Case Study: What is the overview of summary? | Case Study: What is the correlation between evidence/metric/method? | Case Study: What is the time and memory trend? | Case Study: Which metric is most effective on the method? | Case Study: How does method variability differ across datasets for a specific metric? | Cheatsheet | Session Info
5 BenchmarkStudy6 months ago
Overview | For Benchmark Developer | Initialising the Study | Define mapping function and protocol function | Upload Study | For Method Developer | Loading the Study | Preparing for evaluation | Evaluate | Summary | Session Info
4 Preparing and Submitting a Trio6 months ago
Preparing and Submitting a Trio | Step 1: GitHub Personal Access Token (PAT) | Set the PAT in R | Step 2: Build the submission bundle | Step 3: Submit the Trio | Step 4: Verify the submission | Step 5: Downloading an existing Trio | Notes | Session Info
2 Evaluation using Trio6 months ago
Import microbiome data | Initialise a Trio object | Cross validation - using the trio split function | Without Cross-validation | Importing result to BenchmarkInsights | Session Info
1 Introduction to the Trio Class6 months ago
Creating Trio object | Method 1: BenchHub datasets | Method 2: Source and ID | Method 3: Load an object directly | Bonus: Using a custom loader | Adding Components to Trio Sequentially | Adding metrics | Other Features | Caching | Data Splitting | Conclusion | Session Info